Something there is not correct, because you cannot have two waveforms 60° apart, yet measure 0 V between them. Your oscilloscope picture does show a voltage difference - it is the vertical gap between the two traces. Are you absolutely certain that 0 V was the true voltage, and not just a bad connection with your meter?
I can understand the 60° part. That will come about if you have a 3-phase, 3 wire system. Then, treating one phase as the reference, the other two will indeed show a difference of 60° between them. But I’m not aware that Belgium uses that system. [Edit - Further digging reveals that this configuration was used in Belgium, and might still be present in very old systems. Is that the case for you?] As far as I know, only Norway uses a 230 V 3-wire system, but there, each line is 132 V to earth.
The 60° also does not make sense for your induction cooker - unless there is also a neutral connection and the two phases are treated as two separate feeds.
I shall believe for now that you do have what looks like a 3-phase, 3-wire system, but with one ‘phase’ being the neutral. (I cannot call it a 2-phase system, because that would imply 90° between phases.)
Your error is using the voltage of L2 for the reference for L1 current. That will never give the true real power reading because of that 60° difference between L2 and L1.
What is missing is your reason for connecting the emonTx and the emonPi the way you have. I would suggest you use the emonPi exclusively for the black (your L1 - conventionally L1 is brown, L2 is black, L3 is grey) phase, so PV2 & Distrib B, and move the voltage reference onto the black phase also; and use the emonTx exclusively for the brown phase (Brown Use & PV1)
You can put the c.t on the neutral - it must simply face in the opposite direction to make it correct.
That is true, but if your induction cooker is properly designed, it will not be very reactive, but power factor less than 1 is almost inevitable.
[Just for information - the ‘discrete sample’ 3-phase sketch time-shifts the voltage to provide a reference for the second and third phases. The way the time shift is calibrated is to put all 3 c.t’s on the same wire, and adjust the time/phase calibration so that the powers in L2 & L3 are exactly -0.5 × the power in L1. I think you might be seeing much the same thing.]
[Edit]
If you have a 3-phase transformer with a star-connected secondary winding supplying you, and the star point is not connected but the grey phase winding is connected to neutral and earth, then this is what your phasor diagram will look like:

The centre of rotation is the tip of the grey phasor.