That output comes from the config.ino file here
So the “nan” you are seeing is a direct result of Serial.println() trying to print those float memory locations that do not contain float values. The relevant EEPROM locations may in actual fact contain 0xFF’s but because the first byte of EEPROM did NOT contain 0xFF, the remainder of the values were assumed to be appropriate.

The relevant bits of code are line 48 and the section from lines 55 down to 75 here: