Emoncms fails to connect to database after upgrade

Try this… Mariadb cannot connect after dist-upgrade - #11 by Tockley

BUT don’t edit it just yet. What is the contents of that file?

If you do need to change it do

sudo systemctl edit mariadb

and add the line… You need to include the right section - [service] I expect.

ProtectHome=false

[edit]

Actually my service file is as below before any update and ProtectHome =true

Compare this to yours.

pi@emonpi:~ $ cat /lib/systemd/system/mariadb.service
#
# /etc/systemd/system/mariadb.service
#
# This file is free software; you can redistribute it and/or modify it
# under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation; either version 2.1 of the License, or
# (at your option) any later version.
#
# Thanks to:
# Daniel Black
# Erkan Yanar
# David Strauss
# and probably others

[Unit]
Description=MariaDB 10.3.17 database server
Documentation=man:mysqld(8)
Documentation=https://mariadb.com/kb/en/library/systemd/
After=network.target

[Install]
WantedBy=multi-user.target
Alias=mysql.service
Alias=mysqld.service


[Service]

##############################################################################
## Core requirements
##

Type=notify

# Setting this to true can break replication and the Type=notify settings
# See also bind-address mysqld option.
PrivateNetwork=false

##############################################################################
## Package maintainers
##

User=mysql
Group=mysql

# To allow memlock to be used as non-root user if set in configuration
CapabilityBoundingSet=CAP_IPC_LOCK

# Prevent writes to /usr, /boot, and /etc
ProtectSystem=full

# Doesn't yet work properly with SELinux enabled
# NoNewPrivileges=true

PrivateDevices=true

# Prevent accessing /home, /root and /run/user
ProtectHome=true

# Execute pre and post scripts as root, otherwise it does it as User=
PermissionsStartOnly=true

ExecStartPre=/usr/bin/install -m 755 -o mysql -g root -d /var/run/mysqld

# Perform automatic wsrep recovery. When server is started without wsrep,
# galera_recovery simply returns an empty string. In any case, however,
# the script is not expected to return with a non-zero status.
# It is always safe to unset _WSREP_START_POSITION environment variable.
# Do not panic if galera_recovery script is not available. (MDEV-10538)
ExecStartPre=/bin/sh -c "systemctl unset-environment _WSREP_START_POSITION"
ExecStartPre=/bin/sh -c "[ ! -e /usr/bin/galera_recovery ] && VAR= || \
 VAR=`/usr/bin/galera_recovery`; [ $? -eq 0 ] \
 && systemctl set-environment _WSREP_START_POSITION=$VAR || exit 1"

# Needed to create system tables etc.
# ExecStartPre=/usr/bin/mysql_install_db -u mysql

# Start main service
# MYSQLD_OPTS here is for users to set in /etc/systemd/system/mariadb.service.d/MY_SPECIAL.conf
# Use the [Service] section and Environment="MYSQLD_OPTS=...".
# This isn't a replacement for my.cnf.
# _WSREP_NEW_CLUSTER is for the exclusive use of the script galera_new_cluster
ExecStart=/usr/sbin/mysqld $MYSQLD_OPTS $_WSREP_NEW_CLUSTER $_WSREP_START_POSITION
ExecStartPost=/etc/mysql/debian-start

# Unset _WSREP_START_POSITION environment variable.
ExecStartPost=/bin/sh -c "systemctl unset-environment _WSREP_START_POSITION"

KillSignal=SIGTERM

# Don't want to see an automated SIGKILL ever
SendSIGKILL=no

# Restart crashed server only, on-failure would also restart, for example, when
# my.cnf contains unknown option
Restart=on-abort
RestartSec=5s

UMask=007

##############################################################################
## USERs can override
##
##
## by creating a file in /etc/systemd/system/mariadb.service.d/MY_SPECIAL.conf
## and adding/setting the following under [Service] will override this file's
## settings.

# Useful options not previously available in [mysqld_safe]

# Kernels like killing mysqld when out of memory because its big.
# Lets temper that preference a little.
# OOMScoreAdjust=-600

# Explicitly start with high IO priority
# BlockIOWeight=1000

# If you don't use the /tmp directory for SELECT ... OUTFILE and
# LOAD DATA INFILE you can enable PrivateTmp=true for a little more security.
PrivateTmp=false

##
## Options previously available to be set via [mysqld_safe]
## that now needs to be set by systemd config files as mysqld_safe
## isn't executed.
##

# Number of files limit. previously [mysqld_safe] open-file-limit
LimitNOFILE=16364

# Maximium core size. previously [mysqld_safe] core-file-size
# LimitCore=

# Nice priority. previously [mysqld_safe] nice
# Nice=-5

# Timezone. previously [mysqld_safe] timezone
# Environment="TZ=UTC"

# Library substitutions. previously [mysqld_safe] malloc-lib with explicit paths
# (in LD_LIBRARY_PATH) and library name (in LD_PRELOAD).
# Environment="LD_LIBRARY_PATH=/path1 /path2" "LD_PRELOAD=

# Flush caches. previously [mysqld_safe] flush-caches=1
# ExecStartPre=sync
# ExecStartPre=sysctl -q -w vm.drop_caches=3

# numa-interleave=1 equalivant
# Change ExecStart=numactl --interleave=all /usr/sbin/mysqld......

# crash-script equalivent
# FailureAction=

[edit2]

I striped out all the comments

pi@emonpi:~ $ grep -E "^[^#]" /lib/systemd/system/mariadb.service
[Unit]
Description=MariaDB 10.3.17 database server
Documentation=man:mysqld(8)
Documentation=https://mariadb.com/kb/en/library/systemd/
After=network.target
[Install]
WantedBy=multi-user.target
Alias=mysql.service
Alias=mysqld.service
[Service]
Type=notify
PrivateNetwork=false
User=mysql
Group=mysql
CapabilityBoundingSet=CAP_IPC_LOCK
ProtectSystem=full
PrivateDevices=true
ProtectHome=true
PermissionsStartOnly=true
ExecStartPre=/usr/bin/install -m 755 -o mysql -g root -d /var/run/mysqld
ExecStartPre=/bin/sh -c "systemctl unset-environment _WSREP_START_POSITION"
ExecStartPre=/bin/sh -c "[ ! -e /usr/bin/galera_recovery ] && VAR= || \
 VAR=`/usr/bin/galera_recovery`; [ $? -eq 0 ] \
 && systemctl set-environment _WSREP_START_POSITION=$VAR || exit 1"
ExecStart=/usr/sbin/mysqld $MYSQLD_OPTS $_WSREP_NEW_CLUSTER $_WSREP_START_POSITION
ExecStartPost=/etc/mysql/debian-start
ExecStartPost=/bin/sh -c "systemctl unset-environment _WSREP_START_POSITION"
KillSignal=SIGTERM
SendSIGKILL=no
Restart=on-abort
RestartSec=5s
UMask=007
PrivateTmp=false
LimitNOFILE=16364