The emonTx Shield V2 uses surface mount components, and superseded the V1 version.
I’m not sure. I don’t have an emonTx Shield/Arduino combination so can’t prove it, but I gather from comments made here that the stand-alone emonTx can have slightly better performance, depending on the power supply used for the Arduino.
I know almost nothing about the Arduino, but you cannot stack the emonTx shields, so the probable answer is no.
But if you want to build your own analogue front end for it (and presumably you don’t need the radio module on the Shield) then take a look at this very recent thread: Software modification for 3p system 3xCT + 3xVT
Robin Emley can possibly provide you with a 3-phase Mk2PVRouter kit and software. His on-line shop is closed at present, but I believe that’s due to the movement restrictions. He found no advantage with the PLL, his sketches use continuous monitoring code that samples asynchronously but somewhat faster than the PLL.